A joint apron-taxiway assignment model is designed with an emphasis on improving system resilience in order to alleviate the impact of severe weather on aircraft taxiing and enhance the resilience of airport surface operations. Firstly, the performance of the surface operation system is characterized by the taxiing time of aircraft, and the resilience is quantified by the loss and recovery of system performance. Then, based on the topological network structure among the runway, taxiway, and apron, the joint apron-taxiway assignment model is established considering the taxiing time, passenger boarding time and system operation resilience. A three-step algorithm based on linear iteration is developed, taking into account the complex nonlinear model. Finally, a case study based on the Tianjin Binhai International Airport is conducted. The surface operating system’s recovery speed is enhanced by 16.67% and its average performance is raised by 20.68% following optimization. In addition, the average resilience and recovery speed are increased by 20.33% and 27.15%, separately. It indicates that the optimized scheme can facilitate the system’s adaptation to severe weather, reduce the performance loss in the adaptive period, propel the recovery speed of system performance, and ensure its relative stability.